Accepted papers

Full Papers

  • Completing the is-a structure of biomedical ontologies (slides)
    Zlatan Dragisic, Patrick Lambrix and Fang Wei-Kleiner
    (Linköping University, Sweden)
  • Annotation-based feature extraction from sets of SBML models (slides)
    Rebekka Alm, Dagmar Waltemath, Olaf Wolkenhauer and Ron Henkel
    (Fraunhofer Institute and Univ. of Rostock, Germany)
  • ConQuR: Consensus ranking with Query Reformulation on biological data (slides)
    Bryan Brancotte, Bastien Rance, Alain Denise and Sarah Cohen-Boulakia
    (Univ. Paris-Sud and Univ.Hospital HEGP Paris, France)
  • Mining Linked Open Data: a Case Study with Genes Responsible for Intellectual Disability
    Gabin Personeni, Simon Daget, Céline Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Smaïl-Tabbone and Adrien Coulet
    (LORIA, Univ. of Nancy and Univ. of Lorraine, France)
  • An Asset Management Approach to Continuous Integration of Heterogeneous Biomedical Data (slides)
    Robert Schuler, Carl Kesselman and Karl Czajkowski
    (Univ. of Southern California, USA)


Short Papers

  • Discovering Relations between Indirectly Connected Biomedical Concepts (slides)
    Dirk Weissenborn, Michael Schroeder and George Tsatsaronis
    (TU Dresden, Germany)
  • REX – a tool for discovering evolution trends in ontology regions (slides)
    Victor Christen, Anika Groß and Michael Hartung
    (Univ. of Leipzig, Germany)
  • Data management experiences and best practices from the perspective of a plant research institute (slides)
    Daniel Arend, Christian Colmsee, Helmut Knüpffer, Markus Oppermann, Uwe Scholz, Danuta Schüler, Stephan Weise and Matthias Lange
    (IPK Gatersleben, Germany)
  • Data integration between Swedish national clinical health registries and biobanks using an availability system (slides)
    Ola Spjuth, Jani Heikkinen, Jan-Eric Litton, Juni Palmgren and Maria Krestyaninova
    (Karolisnka Institute Stockholm, Sweden and Univ. of Helsinki, Finland)
  • Towards visualizing the alignment of large biomedical ontologies (slides)
    Catia Pesquita, Daniel Faria, Emanuel Santos and Francisco Couto
    (Univ. of Lisbon, Portugal)
  • A semantic web faceted search system for facilitating building of biodiversity and ecosystems services (slides)
    Marie-Angélique Laporte, Isabelle Mougenot, Eric Garnier, Ulrike Stahl, Jens Kattge and Lutz Maicher
    (iDiv Halle-Jena-Leipzig and Max-Planck-Institute Jena, Germany, and UMR Montpellier, France)
  • An Introduction to the Data Retrieval Facilities of the XQt Language for Scientific Data (slides)
    Javad Chamanara and Birgitta König-Ries
    (FSU Jena, Germany)
  • Handling Multiple Foci in Graph Databases (slides)
    Jaudete Daltio and Claudia Bauzer Medeiros
    (Univ. of Campinas, Brazil)
  • Exploiting Semantics from Ontologies and Shared Annotations to Partition Linked Data (slides)
    Guillermo Palma, Maria-Esther Vidal, Louiqa Raschid and Andreas Thor
    (Univ. Simon Bolivar, Venezuela, Univ. of Maryland, USA, and Univ. of Leipzig, Germany)


Poster/Demo Papers


Recent News and Updates

  • July 29, 2014: The presentation slides of the long/short papers are being published here.
  • July 28, 2014: Some photos taken during the conference are available in the facebook group.
  • July 24, 2014: The slides of the keynotes are available here.